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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5455880_5456776_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5455880 - 5456776
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTCT
5'SS Class:
major
3'SS Sequence:
TGCTTAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTGTATTTAACT
Flanking Amino Acid:
IPKRVLDPLVEMQLARLQEL
Intron Amino Acid Position:
2640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
77
0.61
0.9
70.5
38.9
Minor 5ss
41.9
-0.9
3
56.3
43.2
Minor BPS
69.1
0.68
1.5
80.44
41.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599