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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5456852_5456908_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5456852 - 5456908
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTCA
5'SS Class:
major
3'SS Sequence:
ATCTAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTATCTAACT
Flanking Amino Acid:
DCRHALLACQGCKVADGQTV
Intron Amino Acid Position:
2665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.6
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.4
0.57
0.9
70.8
39.2
Minor 5ss
49.7
-0
2.5
66
45
Minor BPS
61.3
0.43
1.9
82.75
37.9

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599