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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5456964_5458006_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5456964 - 5458006
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCT|GCAATTACT
5'SS Class:
weak_major
3'SS Sequence:
TCACTGGTTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCATGCTTCACT
Flanking Amino Acid:
TVFPSLLYFGLNLITLVLHN
Intron Amino Acid Position:
2683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.5
71.4
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
50.4
0.01
1.7
61
44.5
Minor 5ss
31
-2.2
3.9
53.9
42.7
Minor BPS
55.8
0.26
2.2
76.34
46.1

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599