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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5459192_5460355_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5459192 - 5460355
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTAGG
5'SS Class:
major
3'SS Sequence:
TATATTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AGTTATTTACTT
Flanking Amino Acid:
LDINITSVFIEQYTSTKQSW
Intron Amino Acid Position:
2776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.2
65.3
46
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.5
0.58
0.9
67.3
39.9
Minor 5ss
46.8
-0.3
2.3
60.2
44.3
Minor BPS
53.6
0.19
1.8
71.82
39.5

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599