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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5460479_5461135_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5460479 - 5461135

Intron Length:

657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATGATAC

5'SS Class:

weak_major

3'SS Sequence:

TCCTGTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTTTTCTTACCT

Flanking Amino Acid:

SSVDSPCFGQSLPLVYLRTR

Intron Amino Acid Position:

2813

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.1

58.5

35.5

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

71.5

0.48

64.8

41.3

Minor 5ss

45.6

-0.5

2.8

55.3

43.4

Minor BPS

79.4

1.5

95.32

31.5

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599