About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5460479_5463535_F

Intron Information:

Intron Rank:
38
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5460479 - 5463535
Intron Length:
3057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGATAC
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
SSVDSPCFGQTEMKTPKRRQ
Intron Amino Acid Position:
2817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
58.5
35.5
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
45.6
-0.5
2.8
55.3
43.4
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599