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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5463642_5463973_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5463642 - 5463973
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTTTGTCAATT
Flanking Amino Acid:
WFATLTTTPTRAALSHSGSP
Intron Amino Acid Position:
2852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.2
40.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.5
0.82
0.7
80.5
30.9
Minor 5ss
34.3
-1.8
3
44.9
42.8
Minor BPS
50.6
0.1
2.2
75.15
42.4

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599