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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5464127_5464764_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5464127 - 5464764
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAA
5'SS Class:
major
3'SS Sequence:
TCTAAACTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAATATTTAATA
Flanking Amino Acid:
EFEARGKLRHRHTHDLRIHQ
Intron Amino Acid Position:
2903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.7
32.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
60.2
0.23
1
54.7
40.1
Minor 5ss
22.4
-3.2
3.3
28
44
Minor BPS
60.8
0.33
1.4
64.98
34.9

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599