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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5465944_5467428_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5465944 - 5467428

Intron Length:

1485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

ATCTATCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTGCTTTTATCT

Flanking Amino Acid:

RTNIIHPQVYFSSLPPVRVV

Intron Amino Acid Position:

2965

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

85.2

25.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

80.1

0.68

0.9

73.6

Minor 5ss

36.3

-1.6

2.9

46.9

41.8

Minor BPS

60.2

0.4

1.6

76.49

40.6

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599