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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5468435_5468795_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5468435 - 5468795
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACTT
Flanking Amino Acid:
SMESENSRFFRFCVAIKKEN
Intron Amino Acid Position:
3085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.7
0.65
0.9
72.5
37.4
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
55.1
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599