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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5469044_5469699_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5469044 - 5469699
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACCT
Flanking Amino Acid:
TADTSQNIELGVLLENFPIC
Intron Amino Acid Position:
3168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
67.6
39.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.9
0.58
0.9
70.2
40.4
Minor 5ss
30.2
-2.3
3.2
35.2
42.4
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599