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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5470638_5471287_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5470638 - 5471287
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTTAACCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTTCTTAACC
Flanking Amino Acid:
FCYADKEQPNFCTMRIGKGI
Intron Amino Acid Position:
3274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.8
0.49
0.8
66.8
33.1
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
84.2
1.05
1
85.68
32.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599