Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5471431_5471878_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5471431 - 5471878

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTTTTTAATT

Flanking Amino Acid:

GNRPGLIYNIGIDVKKGRGR

Intron Amino Acid Position:

3322

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

73.2

35.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.2

0.5

71.1

38.8

Minor 5ss

41.6

-0.9

3.1

55.7

43.9

Minor BPS

78.1

0.96

86.75

33.6

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599