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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5472010_5472244_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5472010 - 5472244
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTATTACT
Flanking Amino Acid:
FVQREFARGQGTSNPDGYLS
Intron Amino Acid Position:
3366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.7
0.6
0.9
71.4
38.5
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
60.7
0.42
1.9
83.45
37

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599