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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5472421_5472549_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5472421 - 5472549
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATACACT
Flanking Amino Acid:
NKNNSFHINMRDTLGKCYFL
Intron Amino Acid Position:
3424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.9
0.79
0.8
84.1
30.8
Minor 5ss
40.5
-1.1
3.2
57.9
46.8
Minor BPS
46.3
-0.2
2.3
68.33
48.3

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599