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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5472674_5473594_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5472674 - 5473594
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ATAACTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATAACT
Flanking Amino Acid:
PPFRIDNFSKVPIVFNQHGV
Intron Amino Acid Position:
3466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.5
0.44
1
61.5
43.7
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
73.2
0.81
1.6
88.42
36.6

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599