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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5473831_5474596_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5473831 - 5474596
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCTGACTAAACA
Flanking Amino Acid:
IYIAAAYTFSGSQEASVRPV
Intron Amino Acid Position:
3544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
70.6
0.46
1
61.5
44.5
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
53.3
0.1
2
67.79
44.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599