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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5475563_5477302_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5475563 - 5477302
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAACT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
TCGIHGLVVQAKGGVSGLYD
Intron Amino Acid Position:
3671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
78.1
36.3
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
88.2
0.86
0.8
81.3
36.4
Minor 5ss
31.5
-2.1
2.8
42.1
44.1
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599