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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5477873_5478215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5477873 - 5478215

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

ATTCTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TCCTCTTCAAAT

Flanking Amino Acid:

KNPNTEQELEVLVRLEGGIG

Intron Amino Acid Position:

3768

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

80.5

27.4

Major BPS

77.3

0.68

81.5

Major PPT

85.9

0.81

0.7

84.6

29.4

Minor 5ss

41.3

-1

3.1

56.6

Minor BPS

58.7

0.35

1.7

73.05

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599

ENSAPLT00000029463

5422858 - 5521456

98599