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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5478366_5479149_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5478366 - 5479149
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
ATCCACACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATTCTGATTT
Flanking Amino Acid:
MLELSVQRVQVDNQLIGTTQ
Intron Amino Acid Position:
3818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
63.6
0.31
0.9
56.2
33.8
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
58.2
0.33
1.7
77.32
39.3

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599