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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5479300_5480092_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5479300 - 5480092
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTTGTTTATCT
Flanking Amino Acid:
SKNTMTDIYKHLMITARKFT
Intron Amino Acid Position:
3868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
53.7
0.2
2
73.56
43.9

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599