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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5480190_5481895_F

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5480190 - 5481895
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
CCTCTGGATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTATTCTGATTC
Flanking Amino Acid:
NFFGYAQSESEVENYDENLH
Intron Amino Acid Position:
3900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.4
0.3
1
57.6
37.6
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
49.2
-0
1.7
59.35
40.2

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599