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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5482045_5484198_F

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5482045 - 5484198
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
TSNKLPLELKALKSSLGFPL
Intron Amino Acid Position:
3950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74
0.54
1
75.5
38.4
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599