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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5484334_5484641_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5484334 - 5484641

Intron Length:

308

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

ATTGATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTTCTATTGATT

Flanking Amino Acid:

INDILKHFQEELISQAARIL

Intron Amino Acid Position:

3995

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.11

0.7

88.7

23.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

80.1

0.68

0.9

72.9

41.4

Minor 5ss

37.2

-1.4

3.3

45.2

Minor BPS

61.5

0.44

1.6

81.33

33.8

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599