About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5484810_5497512_F

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5484810 - 5497512
Intron Length:
12703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAAT
Flanking Amino Acid:
THGVSNSAAKFAGTLSDGLG
Intron Amino Acid Position:
4051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
77.3
0.94
1.6
95.06
30.8

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599