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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5497646_5499183_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5497646 - 5499183

Intron Length:

1538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTTCGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGCGAT

U12 Branch Point Sequence:

TCTGGCCTACTT

Flanking Amino Acid:

LVAGIQGLAHGIIGGLTSVI

Intron Amino Acid Position:

4095

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

43.9

-0.3

1.4

35.6

42.9

Major PPT

0.47

66.4

40.7

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

42.9

-0.4

2.3

63.6

47.2

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599