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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5499380_5515956_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5499380 - 5515956

Intron Length:

16577

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGCGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTCAT

U12 Branch Point Sequence:

TTTTTCTGCACC

Flanking Amino Acid:

VRDTATLSGPRTQVVRVRKP

Intron Amino Acid Position:

4160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.9

38.6

Major BPS

68.2

0.45

1.1

69.4

37.7

Major PPT

71.7

0.49

66.7

Minor 5ss

30.5

-2.2

2.5

33.4

41.8

Minor BPS

62.1

0.36

1.9

78.77

36.7

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599