Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5516089_5520255_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5516089 - 5520255

Intron Length:

4167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTTAT

U12 Branch Point Sequence:

TGTGGTTTATTT

Flanking Amino Acid:

FKLTDNIQDEFFIAVENTEK

Intron Amino Acid Position:

4204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

79.2

33.9

Major BPS

63.5

0.34

1.4

57.4

49.1

Major PPT

1.1

0.4

13.8

Minor 5ss

40.9

-1

2.8

58.9

39.3

Minor BPS

47.5

-0.1

2.1

67.71

44.1

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599