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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5520506_5521324_F

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5520506 - 5521324
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTAACAATAAAC
Flanking Amino Acid:
IPGPSQQKPMVTVQSEVLAV
Intron Amino Acid Position:
4288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
47.8
-0.1
2
64.42
39.8

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599