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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5546371_5547103_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5546371 - 5547103
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTCTGCTTATTT
Flanking Amino Acid:
WTMHVLVILKSILPQAALEE
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.7
0.76
0.8
77.8
31
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
53
0.17
2
72.14
45.2

Associated Gene:

Gene:
DHRS3
Ensembl Gene ID:
ENSAPLG00000014342
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043309
5546286 - 5571214
24929
ENSAPLT00000014956
5545286 - 5574874
29589