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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5547230_5548232_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5547230 - 5548232
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTATTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
STEMFQGMRIRFPNLFPPLK
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.3
71.6
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
85.5
34
Minor 5ss
29.9
-2.3
2.6
34.3
41
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
DHRS3
Ensembl Gene ID:
ENSAPLG00000014342
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043309
5546286 - 5571214
24929
ENSAPLT00000014956
5545286 - 5574874
29589