About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5549779_5570725_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5549779 - 5570725
Intron Length:
20947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGGCTCTAACA
Flanking Amino Acid:
REFARRGARKIILWGRTEKC
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.2
0.88
0.7
85
29.8
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
59.1
0.28
1.8
71.56
40.9

Associated Gene:

Gene:
DHRS3
Ensembl Gene ID:
ENSAPLG00000014342
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043309
5546286 - 5571214
24929
ENSAPLT00000014956
5545286 - 5574874
29589