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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5595717_5599914_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5595717 - 5599914
Intron Length:
4198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCCTTTATT
Flanking Amino Acid:
HYIMNFGFGLATLLEKIGIT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
73.2
34.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
75.4
0.88
1.5
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014552
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015155
5595561 - 5602791
7231