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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5612879_5615035_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5612879 - 5615035
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
ACTTTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAAACA
Flanking Amino Acid:
HGGAGTFGSIRAFERICRYI
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
76.2
32.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.6
0.6
0.8
74.1
36.1
Minor 5ss
37
-1.5
3.1
51.2
40.4
Minor BPS
55
0.15
2
71.7
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014561
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015166
5611133 - 5616213
5081