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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5615100_5615438_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5615100 - 5615438
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTACTTTGACA
Flanking Amino Acid:
KKCNSVVVSVGYRLAPEHPY
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.8
0.65
0.9
74.8
39.5
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
72
0.69
1.2
77.41
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014561
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015166
5611133 - 5616213
5081