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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5622904_5623665_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5622904 - 5623665
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTGCGTTAACA
Flanking Amino Acid:
RESDSVVVSVGYRLAPEHKY
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70.8
0.47
1
65.2
40
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
61.3
0.35
2.2
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014563
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040192
5619856 - 5625440
5585
ENSAPLT00000015185
5619856 - 5628054
8199