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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5626544_5626696_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5626544 - 5626696
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
TCTCTCCGAACA
Flanking Amino Acid:
PGCPRSGRGKGLILEKLGVC
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
72.2
35.9
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
69.8
0.45
1
65.7
34.7
Minor 5ss
24.9
-2.9
4.2
38.3
46.9
Minor BPS
50.3
0.01
1.8
66.29
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017900
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030339
5626138 - 5627062
925