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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5628827_5631080_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5628827 - 5631080
Intron Length:
2254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CATCTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGCATCTCATTG
Flanking Amino Acid:
IGNWLEERKRGLPAQHFFTH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.9
0.61
0.9
70.1
34.6
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
43.3
-0.6
1.8
44.44
41.9

Associated Gene:

Gene:
C1orf158
Ensembl Gene ID:
ENSAPLG00000014733
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043254
5625304 - 5632149
6846