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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5630219_5631080_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5630219 - 5631080
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGCATCTCATTG
Flanking Amino Acid:
VRRTMRKKYEGLPAQHFFTH
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.9
0.61
0.9
70.1
34.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
43.3
-0.6
1.8
44.44
41.9

Associated Gene:

Gene:
C1orf158
Ensembl Gene ID:
ENSAPLG00000014733
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015350
5625304 - 5632149
6846