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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5631259_5631886_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5631259 - 5631886
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTGTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCATTCATAACA
Flanking Amino Acid:
IPQKSDFPILEPPTNYGLLE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
71.5
41.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.1
0.79
0.8
84.1
30.8
Minor 5ss
51.6
0.05
2.9
72.3
40
Minor BPS
64.7
0.46
1.6
72.79
38.9

Associated Gene:

Gene:
C1orf158
Ensembl Gene ID:
ENSAPLG00000014733
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043254
5625304 - 5632149
6846
ENSAPLT00000015350
5625304 - 5632149
6846