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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5671640_5675774_R

Intron Information:

Intron Rank:
152606
Intron Class:
major
Intron Phase:
Intron Coordinates:
5671640 - 5675774
Intron Length:
4135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTGTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTAGCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.9
0.49
1
70.4
40
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
44.8
-0.4
2.3
63.09
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029708
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036234
5670510 - 5685914
15405