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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5675892_5685804_R

Intron Information:

Intron Rank:
152607
Intron Class:
major
Intron Phase:
Intron Coordinates:
5675892 - 5685804
Intron Length:
9913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAACC
5'SS Class:
major
3'SS Sequence:
ATTTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGCCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.5
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83
0.74
0.9
73.9
41.1
Minor 5ss
40.3
-1.1
2.9
53.5
43.3
Minor BPS
76.3
0.9
1.1
85.09
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029708
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036234
5670510 - 5685914
15405