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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5689281_5700664_F

Intron Information:

Intron Rank:
109673
Intron Class:
major
Intron Phase:
Intron Coordinates:
5689281 - 5700664
Intron Length:
11384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.5
0.53
1
70.9
43.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
60.6
0.41
1.9
84.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014741
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015360
5687191 - 5703585
16395