About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5701491_5701927_F

Intron Information:

Intron Rank:
109675
Intron Class:
major
Intron Phase:
Intron Coordinates:
5701491 - 5701927
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TCTGACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.5
0.66
0.9
72.3
37.6
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014741
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015360
5687191 - 5703585
16395