Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5702596_5703266_F

Intron Information:

Intron Rank:

109677

Intron Class:

major

Intron Phase:

Intron Coordinates:

5702596 - 5703266

Intron Length:

671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.3

75.9

35.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

96.1

1.04

0.5

91.7

19.5

Minor 5ss

36.6

-1.5

2.7

42.9

38.5

Minor BPS

70.5

0.72

1.5

86.8

33.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014741

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015360

5687191 - 5703585

16395