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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5724956_5733227_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5724956 - 5733227
Intron Length:
8272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGCTTTTTGACT
Flanking Amino Acid:
MNQNTTEPTVVVE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80.2
0.68
0.8
74.7
35.1
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
69.2
0.69
1.2
78.83
37.8

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031803
5724882 - 5763326
38445
ENSAPLT00000029800
5724882 - 5769979
45098
ENSAPLT00000044948
5724882 - 5770130
45249