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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5733346_5734898_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5733346 - 5734898
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTATAATT
Flanking Amino Acid:
FPSAVDKTRLGVWATKSILK
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.5
0.71
0.9
77.8
36.5
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
59.5
0.38
1.7
79.74
37

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031803
5724882 - 5763326
38445
ENSAPLT00000029800
5724882 - 5769979
45098
ENSAPLT00000044948
5724882 - 5770130
45249
ENSAPLT00000044130
5726682 - 5771933
45252