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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5734680_5734898_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5734680 - 5734898
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTATAATT
Flanking Amino Acid:
TVAHEQRMKPGVWATKSILK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.5
0.71
0.9
77.8
36.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
59.5
0.38
1.7
79.74
37

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043842
5734144 - 5771933
37790