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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5735003_5738550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5735003 - 5738550
Intron Length:
3548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TTTTCTCCCATA
Flanking Amino Acid:
QVKSNVYMWEVYYPNLGWMC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
81.4
0.71
0.7
77.3
24.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
46.5
-0.2
2.2
67.95
39

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031803
5724882 - 5763326
38445
ENSAPLT00000029800
5724882 - 5769979
45098
ENSAPLT00000044948
5724882 - 5770130
45249
ENSAPLT00000044130
5726682 - 5771933
45252
ENSAPLT00000043842
5734144 - 5771933
37790