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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5738704_5744870_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5738704 - 5744870
Intron Length:
6167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAATG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTCTCTTCTCT
Flanking Amino Acid:
NRTIYYKSLKPIAPGEELLV
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
68.1
42.8
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
73.4
0.53
0.9
69.7
31.1
Minor 5ss
48.7
-0.1
2.6
66.2
44.9
Minor BPS
42
-0.5
3.5
72.48
44.6

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043842
5734144 - 5771933
37790
ENSAPLT00000031803
5724882 - 5763326
38445
ENSAPLT00000029800
5724882 - 5769979
45098
ENSAPLT00000044948
5724882 - 5770130
45249
ENSAPLT00000044130
5726682 - 5771933
45252